Before an immature Zika virus becomes infectious, it does some major remodeling.
In a fledgling virus particle, the inner protein and RNA core (shown in dark blue above, right) forms bridges to the membrane layer that surrounds it. As the virus matures, the core shuffles around and the bridges melt away (below, right).
It’s the first time scientists have seen such rearrangement in the core of a flavivirus, the group that also includes the viruses that cause dengue, West Nile and yellow fever, says virologist Richard Kuhn of Purdue University in West Lafayette, Ind. Scientists don’t know why the immature Zika virus reshuffles its insides, Kuhn says — perhaps it helps the maturing virus become infectious. But that’s the next big question to answer, he says.
If blocking the reorganization somehow made mature viruses harmless, scientists would have a new clue about preventing Zika infection. Kuhn and colleagues’ map of the immature virus’s structure, published online January 9 in Nature Structural & Molecular Biology, could offer other hints for thwarting Zika.
With a technique called cryo-electron microscopy, the team could see three-headed protein spikes (shown in red) studding the surface like some kind of medieval weapon, and could even distinguish the separate layers of the membrane (aqua) that encloses the core. (The maps are radially colored; colors change as distance from the core increases.) Outside the membrane lie surface proteins called envelope, or E, proteins (green and yellow) that help the virus sneak into cells.
Last year, Kuhn’s team reported the structure of the mature Zika virus (SN: 4/30/16, p. 10). The new work offers another illuminating peek at Zika — a baby picture, of sorts.
Any exercise — even the weekend warrior approach, cramming it all into Saturday and Sunday — is better than none. Compared with inactive adults, those who got the recommended amount of weekly exercise, or even substantially less, had about a one-third lower risk of death during the study period, researchers report online January 9 in JAMA Internal Medicine.
Gary O’Donovan at the University of Leicester in England and colleagues analyzed data from 63,591 people ages 40 and older, surveyed between 1994 and 2012 as part of the Health Survey for England and the Scottish Health Survey. Adults should be getting 150 minutes of moderate activity (such as walking) or 75 minutes of vigorous activity (such as jogging) spread out across the week, according to the U.S. Centers for Disease Control and Prevention and the World Health Organization. Measured against people who did absolutely nothing, active people who worked up a sweat three or more times per week, weekend warriors and even those who moved less (60 minutes per week on average) all reduced their risk of dying early. The observational study can’t say that exercise caused the reduced risk, just that there’s an association.
NASA’s Dawn spacecraft has detected organic compounds on Ceres — the first concrete proof of organics on an object in the asteroid belt between Mars and Jupiter.
This material probably originated on the dwarf planet itself, the researchers report in the Feb. 17 Science. The discovery of organic compounds adds to the growing body of evidence that Ceres may have once had a habitable environment.
“We’ve come to recognize that Ceres has a lot of characteristics that are intriguing for those looking at how life starts,” says Andy Rivkin, a planetary astronomer at the Johns Hopkins University Applied Physics Laboratory in Laurel, Md., who was not involved in the study. The Dawn probe has previously detected salts, ammonia-rich clays and water ice on Ceres, which together indicate hydrothermal activity, says study coauthor Carol Raymond, a planetary scientist at NASA’s Jet Propulsion Laboratory in Pasadena, Calif.
For life to begin, you need elements like carbon, hydrogen, nitrogen and oxygen, as well as a source of energy. Both the hydrothermal activity and the presence of organics point toward Ceres having once had a habitable environment, Raymond says.
“If you have an abundance of those elements and you have an energy source,” she says, “then you’ve created sort of the soup from which life could have formed.” But study coauthor Lucy McFadden, a planetary scientist at NASA’s Goddard Space Flight Center in Greenbelt, Md., stresses that the team has not actually found any signs of life on Ceres.
Evidence of Ceres’ organic material comes from areas near Ernutet crater. Dawn picked up signs of a “fingerprint,” or spectra, consistent with organics. The pattern of wavelengths of light absorbed and reflected from these areas is similar to the pattern seen in hydrocarbons on Earth such as kerite and asphaltite. But without a sample from the surface, the team can’t say definitively what organic material is present or how it formed, says study coauthor Harry McSween, a geologist at the University of Tennessee. The team suspects that the organics formed within Ceres’ interior and were brought to the surface by hydrothermal activity. An alternative idea — that a space rock that crashed into Ceres brought the material — is unlikely, the researchers say, because the concentration of organics is so high. An impact would have mixed organic compounds across the surface, diluting the concentration.
Detecting organics on Ceres also has implications for how life arose on Earth, McSween says. Some researchers think that life was jump-started by asteroids and other space rocks that delivered organic compounds to the planet. Finding such organic matter on Ceres “adds some credence to that idea,” he says.
Big data is everywhere these days and police departments are no exception. As law enforcement agencies are tasked with doing more with less, many are using predictive policing tools. These tools feed various data into algorithms to flag people likely to be involved with future crimes or to predict where crimes will occur.
In the years since Time magazine named predictive policing as one of 2011’s best 50 inventions of the year, its popularity has grown. Twenty U.S. cities, including Chicago, Atlanta, Los Angeles and Seattle are using a predictive policing system, and several more are considering it. But with the uptick in use has come a growing chorus of caution. Community activists, civil rights groups and even some skeptical police chiefs have raised concerns that predictive data approaches may unfairly target some groups of people more than others.
New research by statistician Kristian Lum provides a telling case study. Lum, who leads the policing project at the San Francisco-based Human Rights Data Analysis Group, looked at how the crime-mapping program PredPol would perform if put to use in Oakland, Calif. PredPol, which purports to “eliminate profiling concerns,” takes data on crime type, location and time and feeds it into a machine-learning algorithm. The algorithm, originally based on predicting seismic activity after an earthquake, trains itself with the police crime data and then predicts where future crimes will occur.
Lum was interested in bias in the crime data — not political or racial bias, just the ordinary statistical kind. While this bias knows no color or socioeconomic class, Lum and her HRDAG colleague William Isaac demonstrate that it can lead to policing that unfairly targets minorities and those living in poorer neighborhoods.
By applying the algorithm to 2010 data on drug crime reports for Oakland, the researchers generated a predicted rate of drug crime on a map of the city for every day of 2011. The researchers then compared the data used by the algorithm — drug use documented by the police — with a record of overall drug use, whether recorded or not. This ground-truthing came from taking public health data from the 2011 National Survey on Drug Use and Health and demographic data from the city of Oakland to derive an estimate of drug use for all city residents. In this public health-based map, drug use is widely distributed across the city. In the predicted drug crime map, it is not. Instead, drug use deemed worthy of police attention is concentrated in neighborhoods in West Oakland and along International Boulevard, two predominately low-income and nonwhite areas. Predictive policing approaches are often touted as eliminating concerns about police profiling. But rather than correcting bias, the predictive model exacerbated it, Lum said during a panel on data and crime at the American Association for the Advancement of Science annual meeting in Boston in February. While estimates of drug use are pretty even across race, the algorithm would direct Oakland police to locations that would target black people at roughly twice the rate of whites. A similar disparity emerges when analyzing by income group: Poorer neighborhoods get targeted. And a troubling feedback loop emerges when police are sent to targeted locations. If police find slightly more crime in an area because that’s where they’re concentrating patrols, these crimes become part of the dataset that directs where further patrolling should occur. Bias becomes amplified, hot spots hotter.
There’s nothing wrong with PredPol’s algorithm, Lum notes. Machine learning algorithms learn patterns and structure in data. “The algorithm did exactly what we asked; it learned patterns in the data,” she says. The danger is in thinking that predictive policing will tell you about patterns in the occurrence of crime. It’s really telling you about patterns in police records.
Police aren’t tasked with collecting random samples, nor should they be, says Lum. And that’s all the more reason why departments should be transparent and vigilant about how they use their data. In some ways, PredPol-guided policing isn’t so different from old-fashioned pins on a map.
For her part, Lum would prefer that police stick to these timeworn approaches. With pins on a map, the what, why and where of the data are very clear. The black box of an algorithm, on the other hand, lends undue legitimacy to the police targeting certain locations while simultaneously removing accountability. “There’s a move toward thinking machine learning is our savior,” says Lum. “You hear people say, “A computer can’t be racist.’”
The use of predictive policing may be costly, both literally and figuratively. The software programs can run from $20,000 to up to $100,000 per year for larger cities. It’s harder to put numbers on the human cost of over-policing, but the toll is real. Increased police scrutiny can lead to poor mental health outcomes for residents and undermine relationships between police and the communities they serve. Big data doesn’t help when it’s bad data.
I’ve been to the playground enough times to know a juicy parenting controversy when I see (or overhear) one. Bed-sharing, breastfeeding and screen time are always hot-button issues. But I’m not talking about any of those. No, I’m talking about actual juice.
Some parents see juice as a delicious way to get vitamins into little kids. Others see juice as a gateway drug to a sugar-crusted, sedentary lifestyle, wrapped up in a kid-friendly box. No matter where you fall on the juice spectrum, you can be sure there are parents to either side of you. (Disclosure: My kids don’t drink much juice, simply because the people who buy their groceries aren’t all that into it. And juice is heavy.)
Scientific studies on the effects of juice have been somewhat sparse, allowing deeply held juice opinions to run free. One of the chief charges against juice is that it’s packed with sugar. An 8-ounce serving of grape juice, even with no sugar added, weighs in at 36 grams. That tops Coca-Cola, which delivers 26 grams of sugar in 8 ounces. And all of those extra sweet calories can lead to extra weight.
A recent review of eight studies on juice and children’s body weight, published online March 23 in Pediatrics, takes a look at this weight concern. It attempts to clarify whether kids who drink 100 percent fruit juice every day are at greater risk of gaining weight. After sifting through the studies’ data, researchers arrived at an answer that will please pro-juicers: Not really.
“Our study did not find evidence that consuming one serving per day of 100 percent fruit juice influenced BMI to a clinically important degree,” says study coauthor Brandon Auerbach of the University of Washington in Seattle.
The analysis found that for children ages 1 to 6, one daily serving of juice (6 to 8 ounces) was associated with a sliver of an increase in body mass index, or BMI. Consider a 5-year-old girl who started out right on the 50th percentile for weight and BMI. After a year of daily juice, this girl’s BMI may have moved from the 50th to the 52nd or 54th percentile, corresponding to a weight increase of 0.18 to 0.33 pounds over the year. That amount “isn’t trivial, but it’s not enough on its own to lead to poor health,” Auerbach says.
The results, of course, aren’t the final word. The analysis was reviewing data from other studies, and those studies came with their own limitations. For one thing, the studies didn’t assign children to receive or not receive juice. Instead, researchers measured the children’s juice-drinking behavior that was already under way and tried to relate that to their weight. That approach means that it’s possible that differences other than juice consumption could influence the results. It’s important to note the distinction here between the 100 percent fruit juice in the studies and fruit cocktails, which are fruit-flavored drinks that often come with lots of added sugar. The data on those drinks is more damning in terms of weight gain and the risk of cavities, Auerbach says.
Also worth noting: The American Academy of Pediatrics recommends that kids between ages 1 and 6 get only 4 to 6 ounces of juice a day. That’s a smaller amount than many of the kids in the studies received. And the AAP recommends babies younger than 6 months get no juice at all.
In general, whole fruits, such as apples and oranges, are better than juice because they provide fiber and other nutrients absent from juice. (Bonus for toddlers: Oranges are fun to peel. Bummer for parents: Doing so makes a sticky mess.)
Still, the new analysis may ease some guilt around letting the juice flow. And it can enable parents to save their worries for more harmful things, of which there are plenty.
River piracy RIV-er PAHY-ruh-see n. The diversion of headwaters from one stream into another
Ahoy! There be liquid booty on the move in the high mountains. Since May 2016, a channel carved through one of northwestern Canada’s largest glaciers has allowed one river to pillage water from another, new observations reveal. This phenomenon, almost certainly the result of climate change, is the first modern record of river piracy caused by a melting glacier, researchers report online April 17 in Nature Geoscience. Such piracy was rampant as the colossal ice sheets of the Last Glacial Maximum began shrinking around 18,000 years ago. For hundreds of years, the Kaskawulsh Glacier formed a wall that segregates snow and ice meltwater into two streams: the Slims River, which joins with other streams and crosses Alaska before draining into the Bering Sea, and the Kaskawulsh River, which flows southward into the Pacific Ocean.
Last summer, geomorphologist Daniel Shugar of the University of Washington Tacoma and colleagues discovered that melting had carved a canyon across the toe of Kaskawulsh Glacier. This new channel diverts almost all meltwater into the Kaskawulsh River. That’s robbed the now largely parched Slims River and could decrease fish populations and the availability of nutrients downstream, the researchers predict.
Tubelip wrasses eat dangerously, daring to dine on sharp corals lined with stinging cells. New images reveal the fish’s secret to safe eating: lubing up and planting a big one on their dinner.
“It is like sucking dew off a stinging nettle. A thick layer of grease may help,” says David Bellwood, a marine biologist at James Cook University in Townsville, Australia, who snapped the shots with his colleague Victor Huertas.
Of roughly 6,000 fish species that roam reefs, just 128 consume corals. These corallivores specialize in different menus. Well-studied butterfly fish, for example, use their long, thin snouts to nip up coral polyps, the tiny animals that build corals. Tubelip wrasses such as Labropsis australis of the South Pacific are known for nibbling coral with their luscious lips, but until now, it was unclear what part of the coral the fish were eating or how they were eating it. While the surface of the wrasse’s lips looks smooth to the naked eye, convoluted grooves appear under a scanning electron microscope, the team reports June 5 in Current Biology. Mucus-producing cells line each groove. In contrast, the lips of a wrasse species that doesn’t eat corals (Coris gaimard) are sleek and sport fewer slime-secreting cells.
Video footage of L. australis shows that the fish feeds by latching onto coral with its lips and sucking. The slime probably protects the fish’s lips from stinging cells that line the coral skeleton and also serves as a sealant, allowing the wrasse to get suction against the coral’s razorlike ridges.
“Their kiss is so hard it tears the coral’s flesh off its skeleton,” Bellwood says. The team suspects that the fish feed primarily on mucus layers and sometimes tissue that lines the sharp skeleton. So, essentially the fish are using their lip mucus to better harvest the coral’s mucus. Mucus is, in general, a hot commodity in the marine ecosystem. Some fish use it as sunscreen, others for speed — it can reduce drag through the water. Cleaner wrasses even eat slime off the skin of other fish (SN: 8/2/03, p. 78).
Given the threats that coral reefs face from bleaching events and climate change, having fish that suck their flesh might seem a tad brutal. But whether the added stress of snot-eating fish serves as a mere nuisance or a serious threat remains to be studied.
Newly named fossils suggest that a weird and varied chapter in amphibian deep history isn’t totally over.
Small fossils about 220 million years old found along steep red slopes in Colorado represent a near-relative of modern animals called caecilians, says vertebrate paleontologist Adam Huttenlocker of the University of Southern California in Los Angeles.
Caecilians today have long wormy bodies with either shrunken legs or none at all. Yet the nearly 200 modern species of these toothy, burrow-dwelling tropical oddballs are genuine amphibians. The fossil creatures, newly named Chinlestegophis jenkinsi, still had legs but could be the oldest known near-relatives of caecilians, Huttenlocker and colleagues suggest.
A popular view of the amphibian family tree has put caecilians on their own long, peculiar branch beside the ancient frogs and salamanders. But a close look at the new fossils suggests a much earlier split from ancestral frogs and salamanders, the researchers propose June 19 in Proceedings of the National Academy of Sciences. The move puts the caecilians into “a strange but incredibly diverse” group, the stereospondyls, Huttenlocker says. These species included elongated, short-legged beasts with heads shaped like toilet lids.
Among the many stereospondyls, Huttenlocker speculates that caecilians came from “an aberrant branch of miniaturized forms that went subterranean.” And today’s legless burrowers could be this once-flourishing group’s sole survivors.
Like 1980s hair bands, male cockatoos woo females with flamboyant tresses and killer drum solos.
Male palm cockatoos (Probosciger aterrimus) in northern Australia refashion sticks and seedpods into tools that the animals use to bang against trees as part of an elaborate visual and auditory display designed to seduce females. These beats aren’t random, but truly rhythmic, researchers report online June 28 in Science Advances. Aside from humans, the birds are the only known animals to craft drumsticks and rock out. “Palm cockatoos seem to have their own internalized notion of a regular beat, and that has become an important part of the display from males to females,” says Robert Heinsohn, an evolutionary biologist at the Australian National University in Canberra. In addition to drumming, mating displays entail fluffed up head crests, blushing red cheek feathers and vocalizations. A female mates only every two years, so the male engages in such grand gestures to convince her to put her eggs in his hollow tree nest.
Heinsohn and colleagues recorded more than 131 tree-tapping performances from 18 male palm cockatoos in rainforests on the Cape York Peninsula in northern Australia. Each had his own drumming signature. Some tapped faster or slower and added their own flourishes. But the beats were evenly spaced — meaning they constituted a rhythm rather than random noise.
From bonobos to sea lions, other species have shown a propensity for learning and recognizing beats. And chimps drum with their hands and feet, sometimes incorporating trees and stones, but they lack a regular beat.
The closest analogs to cockatoo drummers are human ones, Heinsohn says, though humans typically generate beats as part of a group rather than as soloists. Still, the similarity hints at the universal appeal of a solid beat that may underlie music’s origins.
Quantum particles can burrow through barriers that should be impenetrable — but they don’t do it instantaneously, a new experiment suggests.
The process, known as quantum tunneling, takes place extremely quickly, making it difficult to confirm whether it takes any time at all. Now, in a study of electrons escaping from their atoms, scientists have pinpointed how long the particles take to tunnel out: around 100 attoseconds, or 100 billionths of a billionth of a second, researchers report July 14 in Physical Review Letters. In quantum tunneling, a particle passes through a barrier despite not having enough energy to cross it. It’s as if someone rolled a ball up a hill but didn’t give it a hard enough push to reach the top, and yet somehow the ball tunneled through to the other side.
Although scientists knew that particles could tunnel, until now, “it was not really clear how that happens, or what, precisely, the particle does,” says physicist Christoph Keitel of the Max Planck Institute for Nuclear Physics in Heidelberg, Germany. Theoretical physicists have long debated between two possible options. In one model, the particle appears immediately on the other side of the barrier, with no initial momentum. In the other, the particle takes time to pass through, and it exits the tunnel with some momentum already built up.
Keitel and colleagues tested quantum tunneling by blasting argon and krypton gas with laser pulses. Normally, the pull of an atom’s positively charged nucleus keeps electrons tightly bound, creating an electromagnetic barrier to their escape. But, given a jolt from a laser, electrons can break free. That jolt weakens the electromagnetic barrier just enough that electrons can leave, but only by tunneling.
Although the scientists weren’t able to measure the tunneling time directly, they set up their experiment so that the angle at which the electrons flew away from the atom would reveal which of the two theories was correct. The laser’s light was circularly polarized — its electromagnetic waves rotated in time, changing the direction of the waves’ wiggles. If the electron escaped immediately, the laser would push it in one particular direction. But if tunneling took time, the laser’s direction would have rotated by the time the electron escaped, so the particle would be pushed in a different direction.
Comparing argon and krypton let the scientists cancel out experimental errors, leading to a more sensitive measurement that was able to distinguish between the two theories. The data matched predictions based on the theory that tunneling takes time. The conclusion jibes with some physicists’ expectations. “I’m pretty sure that the tunneling time cannot be instantaneous, because at the end, in physics, nothing can be instantaneous,” says physicist Ursula Keller of ETH Zurich. The result, she says, agrees with an earlier experiment carried out by her team.
Other scientists still think instantaneous tunneling is possible. Physicist Olga Smirnova of the Max Born Institute in Berlin notes that Keitel and colleagues’ conclusions contradict previous research. In theoretical calculations of tunneling in very simple systems, Smirnova and colleagues found no evidence of tunneling time. The complexity of the atoms studied in the new experiment may have led to the discrepancy, Smirnova says. Still, the experiment is “very accurate and done with great care.”
Although quantum tunneling may seem an esoteric concept, scientists have harnessed it for practical purposes. Scanning tunneling microscopes, for instance, use tunneling electrons to image individual atoms. For such an important fundamental process, Keller says, physicists really have to be certain they understand it. “I don’t think we can close the chapter on the discussion yet,” she says.
